Публикации

Патенты

Новые научные направления

Мероприятия

Выгодоприобретатели

Международная магистерская программа

Специальные издания

Создание инфраструктуры

ПУБЛИКАЦИИ ВЕДУЩЕГО УЧЕНОГО П. СЛООТА, СВЯЗАННЫЕ С ДЕЯТЕЛЬНОСТЬЮ ACL


(Reverse chronological order starting 2010)

1 A. Adamatzky; M.H. Lees and P.M.A. Sloot: Bio-development of motorway networks in the Netherlands: A slime mould approach, Advances in Complex Systems, vol. 15, nr 4 pp. 1250034+28. 2012. ISSN: 0219-5259, 1793-6802. (DOI: 10.1142/S0219525912500348)

2 A. Adamatzky; S. Akl; R. Alonso-Sanz; W. van Dessel; Z. Ibrahim; A. Ilachinski; J. Jones; A.V.D.M. Kayem; G.J. Martinez; P. De Oliveira; M. Prokopenko; T. Schubert; P.M.A. Sloot; E. Strano and X.-S. Yang: Are motorways rational from slime mould's point of view, International Journal of Parallel, Emergent and Distributed Systems, (Available on-line June 21 2012) 2012. (DOI: 10.1080/17445760.2012.685884)

3 A. Adamatzky; M.H. Lees and P.M.A. Sloot: Physarum in the Netherlands: Responding to the Flood, in A. Adamatzky, editor, Bioevaluation of World Transport Networks, in series Non Linear Science, pp. 1-380. World Scientific, 2012. ISBN: 978-981-4407-03-8.

4 A. Adamatzky; S. Akl; R. Alonso-Sanz; W. van Dessel; Z. Ibrahim; A. Ilachinski; J. Jones; A.V.D.M. Kayem; G.J. Martinez; P. De Oliveira; M. Prokopenko; T. Schubert; P.M.A. Sloot; E. Strano and X.-S. Yang: Biorationality of motorways, in A. Adamatzky, editor, Bioevaluation of World Transport Networks, World Scientific, 2012. ISBN: 978-981-4407-03-8.

5 H. Ali; Y. Shi; D. Khazanchi; M. Lees; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Proceedings of the International Conference on Computational Science, ICCS 2012, 2024 pages. 2012. ISSN 1877-0509.

6 H. Ali; Y. Shi; D. Khazanchi; M. Lees; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Empowering Science through Computing, Preface for ICCS 2012, Procedia Computer Science, 2012. ISSN 1877-0509. (DOI: 10.1016/j.procs.2012.04.001)

7 A. Bankhead, III; E. Mancini; A.C. Sims; R.S. Baric; S.K. McWeeney and P.M.A. Sloot: A simulation framework to investigate in vitro viral infection dynamics, Journal of Computational Science, (In press) 2012. (DOI: 10.1016/j.jocs.2011.08.007)

8 Q.C. Bui and P.M.A. Sloot: A robust approach to extract biomedical events from literature, Bioinformatics, (In press) Oxford University Press, 2012. Online ISSN 1460-2059 - Print ISSN 1367-4803.

9 C.D. Erdbrink; V.V. Krzhizhanovskaya and P.M.A. Sloot: Controlling flow-induced vibrations of flood barrier gates with data-driven and finite-element modelling, in Proceedings of the 2nd European Conference on FLOODrisk Management, 2nd European Conference on FLOODrisk Management, Rotterdam, The Netherlands, 2012. (http://www.floodrisk2012.net/, http://www.urbanflood.eu/Pages/ScientificPublications.aspx )

10 E. Mancini; F. Castiglione; M. Bernaschi; A. de Luca and P.M.A. Sloot: HIV Reservoirs and Immune Surveillance Evasion Cause the Failure of Structured Treatment Interruptions: A Computational Study, PLoS ONE, vol. 7, nr 4 pp. e36108. Public Library of Science, 04 2012. (DOI: 10.1371/journal.pone.0036108)

11 S. Mei; X. Zhou; Y. Zhu; Z. Zhu; T. Zheng; A.V. Boukhanovsky and P.M.A. Sloot: Simulating City-level Airborne Infectious Diseases, Computers, Environment and Urban Systems, 2012. ISSN 0198-9715. (http://www.journals.elsevier.com/computers-environment-and-urban-systems/ )

12 N.B. Melnikova; V.V. Krzhizhanovskaya and P.M.A. Sloot: Modelling dikes: sensitivity analysis and parameter identification via finite element simulation coupled to data-driven approach, Journal of Hydrology, 2012.

(http://www.journals.elsevier.com/journal-of-hydrology/ )

13 A. Mordvintsev; V.V. Krzhizhanovskaya; M.H. Lees and P.M.A. Sloot: Simulation of City Evacuation Coupled to Flood Dynamics, in Proceedings of the 6th International Conference on Pedestrian and Evacuation Dynamics, (Accepted) 6th International Conference on Pedestrian and Evacuation Dynamics, ETH Zürich, Zürich, 2012.

(http://www.ped2012.org/programme)

14 A. Mordvintsev; V.V. Krzhizhanovskaya; M.H. Lees and P.M.A. Sloot: Simulation of City Evacuation Coupled to Flood Dynamics, in Proceedings of the 6th International Conference on Pedestrian and Evacuation Dynamics. Book of abstracts, 6th International Conference on Pedestrian and Evacuation Dynamics, pp. 156-158. ETH Zurich, Zurich, 2012.

(http://www.ped2012.org/index )

15 G. Qiu; B.D. Kandhai; N.F. Johnson and P.M.A. Sloot: Understanding Complex Dynamics in Derivatives Finance: Why do Options Markets Smile?, Advances in Complex Systems, vol. 15, nr 5 pp. 1250050+19. 2012. (DOI: 10.1142/S0219525912500506)

16 R. Quax; A. Apolloni and P.M.A. Sloot: Information processing reveals how microscopic components affect the macroscopic system-state in complex networks, Scientific Reports, 2012.

17 P.M.A. Sloot and R. Quax: Information processing as a paradigm to model and simulate complex systems, Journal of Computational Science, (editorial) pp. 247-249. 9 2012. ISSN: 1877-7503. (DOI: 10.1016/j.jocs.2012.07.001)

18 N. Zarrabi; M.C.F. Prosperi; R.G. Belleman; M. Colafigli; A. De Luca and P.M.A. Sloot: Combining Epidemiological and Genetic Networks Signifies the Importance of Early Treatment in HIV-1 Transmission, PLoS One, 2012.

19 I. Altintas; M.K. Anand; T. Vuong; S. Bowers; B. Ludäscher and P.M.A. Sloot: A Data Model for Analyzing User Collaborations in Workflow-Driven eScience, The International Journal of Computers and Their Applications (IJCA), vol. 18, nr 3 pp. 160-179. Dec. 2011. ISSN 1076-5204.

20 A. Bankhead, III; E. Mancini; A.C. Sims; R.S. Baric; S.K. McWeeney and P.M.A. Sloot: A Simulation Framework to Investigate in vitro Viral Infection Dynamics, in M. Sato; S. Matsuoka; G.D. van Albada; J. Dongarra and P.M.A. Sloot, editors, Proceedings of the International Conference on Computational Science, ICCS 2011, in series Procedia Computer Science, vol. 4, nr 1 pp. 1798-1807. Elsevier, 2011. ISSN 1877-0509. (DOI: 10.1016/j.procs.2011.04.195)

21 D. Botman; J.A. Kaandorp and P.M.A. Sloot: An integrated approach to infer the gene network in early development of the cnidarian Nematostella venctensis, in T.C.G. Bosch and T.W. Holstein, editors, Searching for Eve: Basal metazoans and the evolution of multicellular complexity, (abstract) International Workshop: Searching for Eve, pp. 101-101. Tutzing, Germany, 2011.

22 Q.C. Bui; S. Katrenko and P.M.A. Sloot: A hybrid approach to extract protein-protein interactions, Bioinformatics , vol. 27, nr 2 pp. 259-265+7. 2011. (DOI: 10.1093/bioinformatics/btq620)

23 Q.C. Bui and P.M.A. Sloot: Extracting Biological Events from Text Using Simple Syntactic Patterns, in Proceedings of BioNLP Shared Task 2011 Workshop, BioNLP Shared Task 2011 Workshop, pp. 143-146. Association for Computational Linguistics, Portland Oregon, 2011.

24 S. Mei; R. Quax; D.A.M.C. van de Vijver; Y. Zhu and P.M.A. Sloot: Increasing risk behaviour can outweigh the benefits of antiretroviral drug treatment on the HIV incidence among men-having-sex-with-men in Amsterdam, BMC Infectious Diseases, vol. 11, nr 118 17 pages. 2011. (DOI: 10.1186/1471-2334-11-118)

25 J.T. Mościcki; M. Lamanna; M.T. Bubak and P.M.A. Sloot: Processing moldable tasks on the grid: Late job binding with lightweight user-level overlay, Future Generation Computer Systems, vol. 27, nr 6 pp. 725-736. June 2011. ISSN 0167-739X. (DOI: 10.1016/j.future.2011.02.002)

26 S. Murtaza; A.G. Hoekstra and P.M.A. Sloot: Cellular Automata Simulations on a FPGA cluster, International Journal of High Performance Computing Applications, vol. 25, nr 2 pp. 193-204. 2011. (DOI: 10.1177/1094342010383138)

27 L.A. Naumov; A.G. Hoekstra and P.M.A. Sloot: Cellular automata models of tumour natural shrinkage, Physica A, vol. 390, nr 12 pp. 2283-2290. June 2011. ISSN 0378-4371. (DOI: 10.1016/j.physa.2011.02.006)

28 R. Quax; D.A. Bader and P.M.A. Sloot: SEECN: SIMULATING COMPLEX SYSTEMS USING DYNAMIC COMPLEX NETWORKS, International Journal for Multiscale Computational Engineering, Special Section, vol. 9, nr 2 pp. 201-214. 2011. (DOI: 10.1615/IntJMultCompEng.v9.i2.50)

29 M. Sato; S. Matsuoka; G.D. van Albada; J. Dongarra and P.M.A. Sloot, editors: Proceedings of the International Conference on Computational Science, ICCS 2011, in series Procedia Computer Science, vol. 4, nr 1 2354 pages. Elsevier, 2011. ISSN 1877-0509.

30 M. Sato; S. Matsuoka; G.D. van Albada; J. Dongarra and P.M.A. Sloot: Preface, 2011. ISSN 1877-0509. (DOI: 10.1016/j.procs.2011.04.001)

31 N. Zarrabi; M.C.F. Prosperi; A. de Luca and P.M.A. Sloot: Inferring HIV transmission networks from epidemic and genetic information, in European Conference on Complex Systems, ECCS'11, 2011.

32 I. Altintas; M.K. Anand; D. Crawl; S. Bowers; A.S.Z. Belloum; P. Missier; B. Ludäscher; C.A. Goble and P.M.A. Sloot: Understanding Collaborative Studies through Interoperable Workflow Provenance, Lecture Notes in Computer Science, vol. 6378, pp. 42-58. (D.L. McGuinness, J.R. Michaelis and L. Moreau, editors), Springer, 2010. (DOI: 10.1007/978-3-642-17819-1_6)

33 P. Bellavista; R.-S. Chang; H.-C. Chao; S.-F. Lin and P.M.A. Sloot: Advances in Grid and Pervasive Computing, (5th International Conference, CPC 2010, Hualien, Taiwan, May 10-13, 2010, Proceedings) in series Lecture Notes in Computer Science, vol. 6104, Springer, Berlin, Heidelberg, May 2010. ISBN-13: 978-3-642-13066-3. (DOI: 10.1007/978-3-642-13067-0)

34 P. Bellavista; R.-S. Chang; H.-C. Chao; S.-F. Lin and P.M.A. Sloot: Advances in Grid and Pervasive Computing: 5th International Conference, GPC 2010, Hualien, Taiwan, May 10-13, 2010: Proceedings, Advances in Grid and Pervasive Computing, (Bellavista2010a 5th International Conference, CPC 2010, Hualien, Taiwan, May 10-13, 2010, Proceedings) Springer, 2010.

35 Q.C. Bui; B. O Nuallain; C.A.B. Boucher and P.M.A. Sloot: Extracting causal relations on HIV drug resistance from literature, BMC Bioinformatics, (PubMedID 20178611) vol. 11, nr 1 pp. 101+11. 2010. ISSN 1471-2105. (DOI: 10.1186/1471-2105-11-101)

36 J. Cui; J.A. Kaandorp; P.M.A. Sloot and P.S. Thiagarajan: Simulating Calcineurin-Centered Calcium Signaling Network in Cardiac Myocytes, in J.E. Garcia and V.R. Wright, editors, Congestive Heart Failure: Symptoms, Causes and Treatment, in series Cardiology Research and Clinical Developments, pp. 111-127. Nova Publishers, 2010. ISBN 978-1-60876-677-2.

37 D. van Dijk; P.M.A. Sloot; J.C. Tay and M.C. Schut: Individual-based simulation of sexual selection: A quantitative genetic approach, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, (Proceedings of the 10th International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 pp. 2003 - 2011. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.224)

38 D. van Dijk; G. Ertaylan; C.A.B. Boucher and P.M.A. Sloot: Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks, BMC Systems Biology, (PubMedID 20633292) vol. 4, nr 1 pp. 96+17. 2010. ISSN 1752-0509. (DOI: 10.1186/1752-0509-4-96)

39 D. Frentz; C.A.B. Boucher; M. Assel; A. De Luca; M. Fabbiani; F. Incardona; P. Libin; N. Manca; V. Müller; B. O Nuallain; R. Paredes; M.C.F. Prosperi; E. Quiros-Roldan; L. Ruiz; P.M.A. Sloot; C. Torti; A.-M. Vandamme; K. van Laethem; M. Zazzi and D.A.M.C. van de Vijver: Comparison of HIV-1 Genotypic Resistance Test Interpretation Systems in Predicting Virological Outcomes Over Time, PLoS ONE, vol. 5, nr 7 pp. e11505+9. Public Library of Science, 07 2010. (DOI: 10.1371/journal.pone.0011505)

40 A.G. Hoekstra; J. Kroc and P.M.A. Sloot, editors: Simulating Complex Systems by Cellular Automata, in series Understanding Complex Systems, 384 pages. Springer, 2010. ISBN: 978-3-642-12202-6.

41 A.G. Hoekstra; J. Kroc and P.M.A. Sloot: Introduction to Modeling of Complex Systems Using Cellular Automata, in Hoekstra,A.G.; Kroc,J. and Sloot,P.M.A., editors, Simulating Complex Systems by Cellular Automata, pp. 1-16. Springer, 2010.

42 S. Jaeger; G. Ertaylan; D. van Dijk; U. Leser and P.M.A. Sloot: Inference of Surface Membrane Factors of HIV-1 Infection through Functional Interaction Networks, PLoS One, vol. 5, nr 10 pp. e13139+12. 2010. (DOI: 10.1371/journal.pone.0013139)

43 V.V. Krzhizhanovskaya; V.V. Korkhov; J.T. Moscicki and P.M.A. Sloot: Dynamic workload balancing with user-level scheduling for parallel applications on heterogeneous Grid resources, in Proceedings of HPC 2010 "High Performance Computing, GRIDS and clouds", An International Advanced Workshop, HPC 2010, "High Performance Computing, GRIDS and clouds", An International Advanced Workshop, Cetraro, Italy, 2010.

(http://www.hpcc.unical.it/hpc2010/announcement.htm )

44 S. Mei; D.A.M.C. van de Vijver; L. Xuan; Y. Zhu and P.M.A. Sloot: Quantitatively evaluating interventions in the influenza A (H1N1) epidemic on China campus grounded on individual-based simulations, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, (Proceedings of the 10th International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 pp. 1675-1682. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.187)

45 S. Mei; P.M.A. Sloot; R. Quax; Y. Zhu and W. Wang: Complex Agent Networks explaining the HIV epidemic among homosexual men in Amsterdam, Mathematics and Computers in Simulation, vol. 80, nr 5 pp. 1018-1030. Jan 2010. (DOI: 10.1016/j.matcom.2009.12.008)

46 L.A. Naumov; A.G. Hoekstra and P.M.A. Sloot: The influence of mitoses rate on growth dynamics of a cellular automata model of tumour growth, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, in series Procedia Computer Science, vol. 1, nr 1 pp. 971 - 978. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.107)

47 M.C.F. Prosperi; M. Rosen-Zvi; A. Altmann; M. Zazzi; S. Di Giambenedetto; R. Kaiser; E. Schülter; D. Struck; P.M.A. Sloot; D.A.M.C. van de Vijver; A.-M. Vandamme; A. Sönnerborg; for the EuResist and Virolab study groups: Antiretroviral Therapy Optimisation without Genotype Resistance Testing: A Perspective on Treatment History Based Models, PLoS ONE, vol. 5, nr 10 pp. e13753+8. Public Library of Science, 10 2010. (DOI: 10.1371/journal.pone.0013753)

48 G. Qiu; B.D. Kandhai and P.M.A. Sloot: Modeling options markets by focusing on active traders, (Proceedings of the 10th International Conference on Computational Science, May 31 - June 2, Amsterdam) vol. 1, nr 1 pp. 2457 - 2462. (P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors), Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.277)

49 U. Schwiegelshohn; R.M. Badia; M.T. Bubak; M. Danelutto; S. Dustdar; F. Gagliardi; A. Geiger; L. Hluchy; D. Kranzlmüller; E. Laure; T. Priol; A. Reinefeld; M. Resch; A. Reuter; O. Rienhoff; T. Rüter; P.M.A. Sloot; D. Talia; K. Ullmann; R. Yahyapour and G. von Voigt: Perspectives on grid computing, Future Generation Computer Systems, vol. 26, nr 8 pp. 1104-1115. 2010. ISSN 0167-739X. (DOI: 10.1016/j.future.2010.05.010)

50 P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors: ICCS 2010, (Proceedings of the $10th International Conference on Computational Science, May 31 - June 2, Amsterdam) in series Procedia Computer Science, vol. 1, nr 1 2772 pages. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509.

51 P.M.A. Sloot and A.G. Hoekstra: Multi-scale modelling in computational biomedicine, Brief in Bioinform, vol. 11, nr 1 pp. 142-152. Oxford University Press, 2010. (DOI: 10.1093/bib/bbp038)

52 P.M.A. Sloot; G.D. van Albada and J. Dongarra: Preface, 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.002)

53 P.M.A. Sloot: Computational science: A kaleidoscopic view into science, Journal of Computational Science, (editorial) vol. 1, nr 4 pp. 189-189. Elsevier B.V., December 2010. ISSN 1877-7503. (DOI: 10.1016/j.jocs.2010.11.001)

54 A. Sottoriva; P.M.A. Sloot; J.P. Medema and L. Vermeulen: Exploring Cancer Stem Cell Niche Directed Tumor Growth, Cell Cycle, vol. 9, nr 8 pp. 1472-1479. Landes Bioscience, 2010. (DOI: 10.4161/cc.9.8.11198)

55 A. Sottoriva; J.J.C. Verhoeff; T. Borovski; S.K. McWeeney; L.A. Naumov; J.P. Medema; P.M.A. Sloot and L. Vermeulen: Cancer Stem Cell Tumor Model Reveals Invasive Morphology and Increased Phenotypical Heterogeneity, Cancer Research, vol. 70, nr 1 pp. 46-56. American Association for Cancer Research, 2010. Print ISSN: 0008-5472; Online ISSN: 1538-7445. (DOI: 10.1158/0008-5472.CAN-09-3663)

56 N. Zarrabi; E. Mancini; J.C. Tay; S. Shahand and P.M.A. Sloot: Modeling HIV-1 intracellular replication: two simulation approaches, in P.M.A. Sloot; G.D. van Albada and J. Dongarra, editors, ICCS 2010, in series Procedia Computer Science, vol. 1, nr 1 pp. 555-564. Elsevier B.V., Amsterdam, May 2010. ISSN: 1877-0509. (DOI: 10.1016/j.procs.2010.04.059)

57 E.V. Zudilova-Seinstra; P.J.H. de Koning; A. Suinesiaputra; B.W. van Schooten; R.J. van der Geest; J.H.C. Reiber and P.M.A. Sloot: Evaluation of 2D and 3D Glove Input Applied to Medical Image Analysis, International Journal of Human-Computer Studies, vol. 68, nr 6 pp. 355-369. 2010. (DOI: 10.1016/j.ijhcs.2009.08.001)